Co-expression analysis

Gene ID Ptp.973.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g47670: NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6) (HF=9e-1)
Module size 6 genes
NF 0.64
%ile 93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.88Ptp.973.1.A1_atCK089832hypothetical protein-9e-1At5g47670NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)O.I.H.G.S.X.
0.8096.00.90PtpAffx.142075.1.S1_atDN498647--6e+0At3g20090CYP705A18O.I.H.G.S.X.
0.6187.00.87PtpAffx.143539.1.S1_atCX184307hypothetical protein-6e-1At2g24870self-incompatibility protein-relatedO.I.H.G.S.X.
0.5078.60.97PtpAffx.141.1.S1_atCF229884--2e+0At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.4067.00.95PtpAffx.99748.1.A1_atDN491439--5e-1At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.3661.60.95PtpAffx.141.2.S1_atDN493233--6e-2At2g3541033 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.199.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
6.097.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.697.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.395.8GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.694.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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