CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.824.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g20250: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.54

%ile 85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.95 Ptp.824.1.S1_x_at CF936396 hypothetical protein - 2e+0 At4g20250 unknown protein O.I. H.G. S.X.
0.83 97.0 0.96 PtpAffx.692.1.S1_x_at CX185889 hypothetical protein - 1e-1 At5g23950 C2 domain-containing protein O.I. H.G. S.X.
0.63 88.1 0.96 Ptp.3673.1.S1_s_at CK096543 hypothetical protein - 6e-1 At4g00355 unknown protein O.I. H.G. S.X.
0.47 74.6 0.96 PtpAffx.115945.1.S1_s_at CN521589 hypothetical protein - 5e-2 At4g00355 unknown protein O.I. H.G. S.X.
0.38 63.7 0.96 Ptp.5801.2.S1_a_at BU836809 hypothetical protein - 2e+0 At1g24440 protein binding / zinc ion binding O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.212106.1.S1_at pmrna23742 calcium dependent protein kinase 12 - 5e-33 At5g23580 CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	86.0	0.95	Ptp.824.1.S1_x_at	CF936396	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.
0.83	97.0	0.96	PtpAffx.692.1.S1_x_at	CX185889	hypothetical protein	-	1e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.
0.63	88.1	0.96	Ptp.3673.1.S1_s_at	CK096543	hypothetical protein	-	6e-1	At4g00355	unknown protein	O.I.	H.G.	S.X.
0.47	74.6	0.96	PtpAffx.115945.1.S1_s_at	CN521589	hypothetical protein	-	5e-2	At4g00355	unknown protein	O.I.	H.G.	S.X.
0.38	63.7	0.96	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.95	PtpAffx.692.20.S1_s_at	BU883660	hypothetical protein	-	1e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.
0.61	87.0	0.95	PtpAffx.221517.1.S1_at	pmrna38443	hypothetical protein	-	1e-13	At1g17665	unknown protein	O.I.	H.G.	S.X.
0.59	84.9	0.94	PtpAffx.14544.1.S1_at	CV260978	hypothetical protein	-	2e-2	At1g68020	ATTPS6	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.202105.1.S1_s_at	pmrna4204	hypothetical protein	-	1e-3	At3g60380	-	O.I.	H.G.	S.X.
0.43	69.7	0.90	PtpAffx.201417.1.S1_s_at	pmrna2797	-	-	5e-17	At2g46870	NGA1 (NGATHA1)	O.I.	H.G.	S.X.
0.43	69.7	0.92	PtpAffx.113508.1.S1_at	BU809203	hypothetical protein	-	1e+0	At1g74230	GR-RBP5 (glycine-rich RNA-binding protein 5)	O.I.	H.G.	S.X.
0.43	69.7	0.92	PtpAffx.163109.1.S1_s_at	BU886950	-	-	1e+0	At3g49820	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.150530.1.S1_at	CX187047	hypothetical protein	-	8e-6	At4g00355	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.221518.1.S1_at	pmrna38444	hypothetical protein	-	2e-20	At1g17665	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.27255.2.S1_a_at	CX184745	hypothetical protein	-	4e-13	At3g45260	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.11623.1.A1_at	CV260515	hypothetical protein	-	8e-25	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.17886.2.S1_s_at	CX183909	hypothetical protein	-	9e-2	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.
0.38	63.7	0.93	PtpAffx.36616.1.S1_at	CV228724	hypothetical protein	-	4e-11	At5g57850	aminotransferase class IV family protein	O.I.	H.G.	S.X.
0.36	61.6	0.90	PtpAffx.692.16.S1_at	CV272320	hypothetical protein	-	2e+0	At4g20250	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.13498.1.A1_s_at	CV266183	hypothetical protein	-	3e+0	At2g39440	-	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.57928.1.S1_s_at	CK319492	hypothetical protein	-	1e-33	At2g36580	pyruvate kinase, putative	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.15785.2.A1_a_at	CV259833	hypothetical protein	-	2e-8	At4g29850	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.113369.1.S1_at	CX185014	NAC domain protein, IPR003441	-	5e-26	At1g33060	no apical meristem (NAM) family protein	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.10860.1.S1_at	CK116620	hypothetical protein	-	4e-1	At5g64890	PROPEP2 (Elicitor peptide 2 precursor)	O.I.	H.G.	S.X.
0.35	59.7	0.92	Ptp.4300.1.S1_s_at	DN489492	hypothetical protein	-	3e-1	At2g30410	KIS (KIESEL)	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.17330.1.S1_at	CV243084	hypothetical protein	-	2e-19	At4g17940	binding	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.39117.1.S1_at	CK096432	hypothetical protein	-	1e-23	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.32004.2.S1_a_at	AJ778820	hypothetical protein	-	9e-10	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.32	55.2	0.92	PtpAffx.209881.1.S1_at	pmrna19467	hypothetical protein	-	7e-11	At1g29340	PUB17 (PLANT U-BOX 17)	O.I.	H.G.	S.X.
0.32	55.2	0.96	PtpAffx.163436.1.S1_s_at	CK107725	hypothetical protein	-	9e-20	At1g31930	XLG3 (extra-large GTP-binding protein 3)	O.I.	H.G.	S.X.
0.31	53.7	0.91	PtpAffx.47384.1.S1_a_at	CV236090	hypothetical protein	-	5e-1	At5g50345	-	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.5141.1.A1_at	CV267910	hypothetical protein	-	3e-8	At2g03510	band 7 family protein	O.I.	H.G.	S.X.
0.31	53.7	0.95	Ptp.170.1.S1_s_at	CK089230	hypothetical protein	-	2e+0	At3g13660	disease resistance response	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.12733.1.S1_at	CK102307	hypothetical protein	-	4e+0	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.
0.30	52.0	0.93	Ptp.6002.1.S1_s_at	CV242323	hypothetical protein	-	5e-20	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.
0.30	52.0	0.95	PtpAffx.206220.1.S1_at	pmrna12348	hypothetical protein	-	1e-3	At3g15260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.205481.1.S1_x_at	pmrna10842	hypothetical protein	-	5e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.210439.1.S1_s_at	pmrna20500	aminophospholipid ATPase	-	6e-65	At1g68710	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	Ptp.333.1.S1_at	CK088426	hypothetical protein	-	6e-7	At4g12040	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.221077.1.S1_x_at	pmrna37656	hypothetical protein	-	1e-23	At2g44730	transcription factor	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.91337.1.S1_at	CA930253	hypothetical protein	-	1e-13	At2g39800	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	O.I.	H.G.	S.X.
0.27	47.1	0.94	Ptp.3507.1.S1_s_at	BP931120	-	-	3e-6	At1g09970	LRR XI-23	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.35380.1.S1_a_at	CV256335	hypothetical protein	-	1e+0	Atmg00900	-	O.I.	H.G.	S.X.
0.25	43.6	0.93	PtpAffx.61514.1.A1_at	BP930580	hypothetical protein	-	8e-2	At3g61400	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.207242.1.S1_s_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.32882.1.A1_at	CK096564	histone deacetylase	-	3e-29	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.8616.1.A1_at	CV242248	hypothetical protein	-	2e-28	At1g11360	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.11424.1.A1_s_at	CV271450	hypothetical protein	-	2e-12	At3g12630	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.94574.1.A1_a_at	CV281840	hypothetical protein	-	2e-3	At2g29640	JOSL (JOSEPHIN-LIKE PROTEIN)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5 90.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.1	96.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Ptp.824.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g20250: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.54
%ile	85.1

Co-expression analysis

Gene ID Ptp.824.1.S1_x_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g20250: unknown protein (HF=2e+0) Module size 6 genes NF 0.54 %ile 85.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.824.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g20250: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.54

%ile 85.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays