Co-expression analysis

Gene ID Ptp.824.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g20250: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.54
%ile 85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.95Ptp.824.1.S1_x_atCF936396hypothetical protein-2e+0At4g20250unknown proteinO.I.H.G.S.X.
0.8397.00.96PtpAffx.692.1.S1_x_atCX185889hypothetical protein-1e-1At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.6388.10.96Ptp.3673.1.S1_s_atCK096543hypothetical protein-6e-1At4g00355unknown proteinO.I.H.G.S.X.
0.4774.60.96PtpAffx.115945.1.S1_s_atCN521589hypothetical protein-5e-2At4g00355unknown proteinO.I.H.G.S.X.
0.3863.70.96Ptp.5801.2.S1_a_atBU836809hypothetical protein-2e+0At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.3661.60.96PtpAffx.212106.1.S1_atpmrna23742calcium dependent protein kinase 12-5e-33At5g23580CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.188.6GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEl0018D08f2_at, orthologous to the query gene, Ptp.824.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8293.1HVSMEl0018D08f2_atAt4g20250--1e+0At3g57340DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.5774.9Contig7615_s_atAt4g20250--8e-1At4g33520PAA1 (P-TYPE ATP-ASE 1)O.I.H.G.S.X.
0.5774.9Contig7972_atAt4g20250--7e+0At5g55810AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)O.I.H.G.S.X.
0.4661.0Contig2053_atAt4g20250--5e+0At2g38880NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)O.I.H.G.S.X.
0.4356.4rbags1d23_s_atAt4g20250--1e+1At5g50000protein kinase, putativeO.I.H.G.S.X.
0.3647.1Contig4672_atAt4g20250--4e-71At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.3342.6Contig1012_s_atAt4g20250--2e-43At2g34420LHB1B2O.I.H.G.S.X.
0.3037.0Contig12867_atAt4g20250--9e-41At1g34430EMB3003 (embryo defective 3003)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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