Co-expression analysis

Gene ID	Ptp.8093.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g39630: vesicle transport v-SNARE family protein (HF=3e+0)
Module size	6 genes
NF	0.17
%ile	31.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.83	Ptp.8093.2.A1_at	CV260421	hypothetical protein	-	3e+0	At5g39630	vesicle transport v-SNARE family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.84	PtpAffx.207392.1.S1_at	pmrna14668	hypothetical protein	-	2e-1	At5g43200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.84	PtpAffx.216337.1.S1_at	pmrna31051	hypothetical protein	-	5e-1	At1g05650	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.83	Ptp.2650.1.S1_at	DN495004	-	-	2e-1	At1g56045	ribosomal protein L41 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.84	PtpAffx.218919.1.S1_at	pmrna34676	hypothetical protein	-	2e+0	At1g20790	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.83	PtpAffx.91108.1.S1_at	CA825894	hypothetical protein	-	8e-11	At2g45690	SSE1 (SHRUNKEN SEED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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