Co-expression analysis

Gene ID	Ptp.8056.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g64300: ATGCH (HF=1e-7)
Module size	6 genes
NF	0.64
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	Ptp.8056.1.S1_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.93	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	Ptp.8056.1.S1_s_at	DN498527	hypothetical protein	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.212573.1.S1_at	pmrna24632	hypothetical protein	-	2e-40	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.50176.2.S1_a_at	CV256175	hypothetical protein	-	1e-16	At2g26830	emb1187 (embryo defective 1187)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.71504.1.S1_at	CK091854	hypothetical protein	-	4e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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