Co-expression analysis

Gene ID	Ptp.777.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g05530: IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) (HF=7e+0)
Module size	6 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.95	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.206211.1.S1_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	Ptp.6835.1.A1_at	CV245044	-	-	1e+0	At3g25770	AOC2 (ALLENE OXIDE CYCLASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.29282.1.A1_at	BP934395	hypothetical protein	-	9e-13	At5g27450	MK (MEVALONATE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.206211.1.S1_x_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.95	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.9848.1.A1_at, orthologous to the query gene, Ptp.777.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.9848.1.A1_at	At4g05530	-	-	1e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.701.1.A1_a_at	At4g05530	26S proteasome non-ATPase regulatory subunit 3 /// 26S proteasome non-ATPase regulatory subunit 3	-	2e-8	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.16958.3.S1_at	At4g05530	-	-	4e+0	At2g29263	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.2313.1.S1_at	At4g05530	-	-	4e-1	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.9947.1.A1_at	At4g05530	hypothetical protein LOC100278924	-	9e-2	At3g02160	DNA binding	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.10563.1.S1_at	At4g05530	hypothetical protein LOC100193826	-	3e-6	At3g10850	GLY2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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