CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.777.1.A1_at

Gene name
Homology with Arabidopsis Similar to At4g05530: IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) (HF=7e+0)

Module size 6 genes

NF 0.36

%ile 62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.95 Ptp.777.1.A1_at CV236864 - - 7e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.206211.1.S1_at pmrna12333 hypothetical protein - 2e-19 At3g13060 - O.I. H.G. S.X.
0.38 63.7 0.94 Ptp.6835.1.A1_at CV245044 - - 1e+0 At3g25770 AOC2 (ALLENE OXIDE CYCLASE 2) O.I. H.G. S.X.
0.33 57.5 0.96 PtpAffx.29282.1.A1_at BP934395 hypothetical protein - 9e-13 At5g27450 MK (MEVALONATE KINASE) O.I. H.G. S.X.
0.29 50.5 0.96 PtpAffx.206211.1.S1_x_at pmrna12333 hypothetical protein - 2e-19 At3g13060 - O.I. H.G. S.X.
0.14 23.5 0.95 Ptp.6370.3.S1_a_at CK091400 hypothetical protein - 6e+0 At3g23635 RTFL13 (ROTUNDIFOLIA LIKE 13) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.8 94.9 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g05530, orthologous to the query gene, Ptp.777.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g05530 825905 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA. O.I. H.G. S.X.
0.44 57.2 At4g04470 825777 PMP22 22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer. O.I. H.G. S.X.
0.30 32.1 At4g07390 826170 PQ-loop repeat family protein / transmembrane family protein F:unknown;P:unknown;C:membrane;MPFO O.I. H.G. S.X.
0.29 30.3 At1g27530 839644 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. H.G. S.X.
0.29 30.3 At2g21270 816666 ubiquitin fusion degradation UFD1 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:unknown;OFMPAB O.I. H.G. S.X.
0.26 24.4 At1g16890 838260 ubiquitin-conjugating enzyme, putative UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. O.I. H.G. S.X.
0.26 24.4 At5g10780 830945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.21 15.8 At1g76150 843947 maoC-like dehydratase domain-containing protein Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves. O.I. H.G. S.X.
0.20 14.4 At5g50870 835159 UBC27 (ubiquitin-conjugating enzyme 27) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. H.G. S.X.
0.19 12.7 At3g51610 824324 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO O.I. H.G. S.X.
0.19 12.7 At3g62580 825432 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPB O.I. H.G. S.X.
0.17 10.2 At3g02520 821060 GRF7 (GENERAL REGULATORY FACTOR 7) Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν). O.I. H.G. S.X.
0.15 7.8 At5g38470 833835 DNA repair protein RAD23, putative F:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVA O.I. H.G. S.X.
0.14 6.8 At1g08970 837417 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) heme activated protein (HAP5c) O.I. H.G. S.X.
0.12 4.9 At3g06050 819778 PRXIIF (PEROXIREDOXIN IIF) Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions. O.I. H.G. S.X.
0.10 3.4 At1g47420 841147 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;PO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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