Co-expression analysis

Gene ID Ptp.777.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g05530: IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) (HF=7e+0)
Module size 6 genes
NF 0.36
%ile 62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.95Ptp.777.1.A1_atCV236864--7e+0At4g05530IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)O.I.H.G.S.X.
0.5078.60.95PtpAffx.206211.1.S1_atpmrna12333hypothetical protein-2e-19At3g13060-O.I.H.G.S.X.
0.3863.70.94Ptp.6835.1.A1_atCV245044--1e+0At3g25770AOC2 (ALLENE OXIDE CYCLASE 2)O.I.H.G.S.X.
0.3357.50.96PtpAffx.29282.1.A1_atBP934395hypothetical protein-9e-13At5g27450MK (MEVALONATE KINASE)O.I.H.G.S.X.
0.2950.50.96PtpAffx.206211.1.S1_x_atpmrna12333hypothetical protein-2e-19At3g13060-O.I.H.G.S.X.
0.1423.50.95Ptp.6370.3.S1_a_atCK091400hypothetical protein-6e+0At3g23635RTFL13 (ROTUNDIFOLIA LIKE 13)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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