CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.7764.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g49170: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.68

%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.96 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.
0.67 91.1 0.95 Ptp.4669.1.S1_at CK088332 - - 8e-13 At3g53190 pectate lyase family protein O.I. H.G. S.X.
0.67 91.1 0.97 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.60 86.0 0.96 Ptp.789.1.S1_at CK089311 hypothetical protein - 8e-8 At2g41820 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.7158.1.S1_at CV246958 - - 8e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.96	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.
0.67	91.1	0.95	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	O.I.	H.G.	S.X.
0.67	91.1	0.97	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.60	86.0	0.96	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.44	71.9	0.96	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	87.0	0.92	Ptp.6755.1.S1_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.59	84.9	0.93	Ptp.2707.1.S1_at	BU826219	hypothetical protein	-	1e-1	At1g78520	-	O.I.	H.G.	S.X.
0.53	80.5	0.94	PtpAffx.16306.1.S1_at	DN497208	cytochrome P450	-	3e-1	At3g26320	CYP71B36	O.I.	H.G.	S.X.
0.50	78.6	0.93	Ptp.6755.1.S1_x_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.50	78.6	0.96	Ptp.2544.1.A1_at	CK087698	hypothetical protein	-	1e-12	At3g24660	TMKL1 (transmembrane kinase-like 1)	O.I.	H.G.	S.X.
0.47	74.6	0.93	PtpAffx.205796.1.S1_at	pmrna11458	hypothetical protein	-	5e-2	At1g19715	jacalin lectin family protein	O.I.	H.G.	S.X.
0.46	73.7	0.94	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.44	71.9	0.88	Ptp.6116.1.S1_at	BU811435	cytochrome P450 /// cytochrome P450	-	2e-3	At4g31500	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	O.I.	H.G.	S.X.
0.44	71.9	0.91	Ptp.6471.1.S1_at	CN549809	-	-	2e-9	At1g09610	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.26773.2.A1_at	CF232644	hypothetical protein	-	1e+0	At4g12840	unknown protein	O.I.	H.G.	S.X.
0.43	69.7	0.93	PtpAffx.908.1.S1_at	CV263697	hypothetical protein	-	5e+0	At4g33720	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.1704.2.S1_at	CK088122	-	-	3e-5	At1g28400	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.213823.1.S1_at	pmrna26979	hypothetical protein	-	3e-2	At5g64240	AtMC3 (metacaspase 3)	O.I.	H.G.	S.X.
0.33	57.5	0.92	Ptp.4115.1.S1_at	AJ777870	hypothetical protein	-	1e-1	At1g72150	PATL1 (PATELLIN 1)	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.6684.1.S1_at	DN484836	hypothetical protein	-	1e+0	At5g63700	zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.
0.32	55.2	0.92	PtpAffx.153576.1.A1_at	CV251940	hypothetical protein	-	1e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.73634.1.S1_s_at	DN502654	hypothetical protein	-	6e-55	At2g47500	ATP binding / microtubule motor	O.I.	H.G.	S.X.
0.30	52.0	0.95	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.225.1.A1_at	CK087574	hypothetical protein	-	1e+0	At4g20300	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.94	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.
0.27	47.1	0.91	Ptp.2993.1.S1_at	CX658401	hypothetical protein	-	7e-12	At3g02885	GASA5 (GAST1 PROTEIN HOMOLOG 5)	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.105282.1.S1_at	CK107491	hypothetical protein	-	3e-1	At3g26110	-	O.I.	H.G.	S.X.
0.27	47.1	0.95	Ptp.4288.1.S1_at	DN499435	chromatin remodeling complex subunit	-	7e-2	At5g66750	CHR1 (CHROMATIN REMODELING 1)	O.I.	H.G.	S.X.
0.26	45.2	0.90	Ptp.7277.1.S1_at	BU896280	hypothetical protein	-	4e-1	At3g24068	-	O.I.	H.G.	S.X.
0.25	43.6	0.94	Ptp.3671.1.S1_at	CK112025	hypothetical protein	-	3e-2	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.
0.25	43.6	0.94	Ptp.2693.1.A1_at	CV231334	hypothetical protein	-	9e-8	At3g20015	aspartic-type endopeptidase	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.39559.1.S1_at	CF237196	hypothetical protein	-	3e+0	At3g45460	zinc ion binding	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.92940.1.S1_at	CX658017	dehydroquinate dehydratase/ shikimate dehydrogenase	-	2e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.0	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.7764.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g49170: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	95.2

Co-expression analysis

Gene ID Ptp.7764.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g49170: unknown protein (HF=5e+0) Module size 6 genes NF 0.68 %ile 95.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.7764.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g49170: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.68

%ile 95.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays