Co-expression analysis

Gene ID Ptp.7764.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g49170: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.68
%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.96Ptp.7764.1.S1_atDN489656hypothetical protein-5e+0At5g49170unknown proteinO.I.H.G.S.X.
0.6791.10.95Ptp.4669.1.S1_atCK088332--8e-13At3g53190pectate lyase family proteinO.I.H.G.S.X.
0.6791.10.97Ptp.478.1.A1_atCK087253hypothetical protein-4e-1At4g25410DNA binding / transcription factorO.I.H.G.S.X.
0.6086.00.96Ptp.789.1.S1_atCK089311hypothetical protein-8e-8At2g41820leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4471.90.96Ptp.7158.1.S1_atCV246958--8e+0At5g64310AGP1 (ARABINOGALACTAN PROTEIN 1)O.I.H.G.S.X.
0.3661.60.96PtpAffx.11483.2.A1_atCK106946hypothetical protein-7e-2At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.137523.1.A1_at, orthologous to the query gene, Ptp.7764.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7589.8TaAffx.137523.1.A1_atAt5g49170--4e+0At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.7891.1TaAffx.12044.1.S1_atAt5g49170--1e+1At4g30097unknown proteinO.I.H.G.S.X.
0.7891.1Ta.21029.1.S1_atAt5g49170--2e-1At3g02000ROXY1O.I.H.G.S.X.
0.6986.9TaAffx.48658.1.S1_s_atAt5g49170--2e+0At5g17900-O.I.H.G.S.X.
0.6786.3Ta.28411.1.A1_atAt5g49170--3e-1At4g37010caltractin, putative / centrin, putativeO.I.H.G.S.X.
0.6786.3Ta.2882.1.S1_atAt5g49170EF-hand Ca2+-binding protein CCD1-9e-2At5g26720unknown proteinO.I.H.G.S.X.
0.6583.9TaAffx.132026.1.A1_atAt5g49170--5e+0At5g13080WRKY75O.I.H.G.S.X.
0.6483.6Ta.15199.1.S1_atAt5g49170--3e+0At1g26350unknown proteinO.I.H.G.S.X.
0.6383.1Ta.3132.1.S1_x_atAt5g49170--1e+1At4g28280unknown proteinO.I.H.G.S.X.
0.6383.1Ta.7473.1.S1_atAt5g49170--9e-3At1g74800galactosyltransferase family proteinO.I.H.G.S.X.
0.5879.2Ta.7143.2.S1_x_atAt5g49170--2e+1At5g19380unknown proteinO.I.H.G.S.X.
0.5779.2Ta.10520.1.S1_atAt5g49170--2e-2At4g29780unknown proteinO.I.H.G.S.X.
0.5779.2Ta.13302.1.S1_atAt5g49170--5e+0At5g15060-O.I.H.G.S.X.
0.5678.6TaAffx.79075.1.S1_atAt5g49170--1e+0At1g23750DNA-binding protein-relatedO.I.H.G.S.X.
0.5576.8Ta.7143.1.S1_x_atAt5g49170--2e+1At5g60840unknown proteinO.I.H.G.S.X.
0.5576.8Ta.3132.1.S1_s_atAt5g49170--1e+1At4g28280unknown proteinO.I.H.G.S.X.
0.5576.8Ta.6241.1.S1_x_atAt5g49170--3e+0At2g36420unknown proteinO.I.H.G.S.X.
0.5072.4TaAffx.105935.1.S1_atAt5g49170--5e+0At4g13100zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3854.7Ta.6241.1.S1_s_atAt5g49170--1e+1At2g41400unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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