Co-expression analysis

Gene ID	Ptp.7764.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g49170: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.32324.1.A1_at, orthologous to the query gene, Ptp.7764.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.32324.1.A1_at	At5g49170	-	-	7e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.3499.1.S1_s_at	At5g49170	-	-	1e-8	At1g50920	GTP-binding protein-related	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.1301.41.S1_at	At5g49170	-	-	4e-14	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.3200.1.S1_at	At5g49170	-	-	9e-6	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	Gma.5671.1.S1_at	At5g49170	-	-	2e+0	At2g31740	methyltransferase	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.4543.1.S1_at	At5g49170	-	-	1e-1	At4g09170	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage