Co-expression analysis

Gene ID Ptp.7695.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g02020: unknown protein (HF=2e-2)
Module size 6 genes
NF 0.55
%ile 85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.95Ptp.7695.1.S1_s_atBU862504hypothetical protein-2e-2At5g02020unknown proteinO.I.H.G.S.X.
0.8397.00.96PtpAffx.204632.1.S1_atpmrna9105hypothetical protein-1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.6791.10.96PtpAffx.225008.1.S1_atpmrna43994hypothetical protein-2e+0At5g65580unknown proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.9749.1.A1_atDN491489hypothetical protein-4e+0At5g04790unknown proteinO.I.H.G.S.X.
0.4369.70.96PtpAffx.152294.1.S1_atCX653673--5e-1At3g59440calcium-binding protein, putativeO.I.H.G.S.X.
0.3052.00.95PtpAffx.224424.1.S1_s_atpmrna42934hypothetical protein-1e-3At3g17410serine/threonine protein kinase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.092.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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