Co-expression analysis

Gene ID	Ptp.7649.1.S1_at
Gene name	cinnamyl alcohol dehydrogenase-like protein
Homology with Arabidopsis	Similar to At4g37970: CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) (HF=5e-6)
Module size	6 genes
NF	0.76
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.7649.1.S1_at	BI125474	cinnamyl alcohol dehydrogenase-like protein	-	5e-6	At4g37970	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.99	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.17627.1.A1_at, orthologous to the query gene, Ptp.7649.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	Zm.17627.1.A1_at	At4g37970	hypothetical protein LOC100272868	-	3e-1	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5322.1.A1_at	At4g37970	hypothetical protein LOC100274445	-	9e-152	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.13622.1.A1_at	At4g37970	hypothetical protein LOC100274236	-	5e-2	At2g26350	PEX10	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.18409.1.A1_at	At4g37970	hypothetical protein LOC100191200	-	5e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.4300.2.S1_a_at	At4g37970	hypothetical protein LOC100274411	-	3e-8	At5g09880	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.2617.1.A1_at	At4g37970	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.5265.1.S1_at	At4g37970	Hypothetical protein LOC100191432	-	4e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.19352.1.S1_at	At4g37970	-	-	2e-16	At5g49990	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.5922.1.A1_at	At4g37970	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.5789.10.A1_x_at	At4g37970	hypothetical protein LOC100192516	-	6e-14	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.6321.1.A1_at	At4g37970	-	-	2e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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