Co-expression analysis

Gene ID	Ptp.7649.1.S1_at
Gene name	cinnamyl alcohol dehydrogenase-like protein
Homology with Arabidopsis	Similar to At4g37970: CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) (HF=5e-6)
Module size	6 genes
NF	0.76
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.7649.1.S1_at	BI125474	cinnamyl alcohol dehydrogenase-like protein	-	5e-6	At4g37970	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.99	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1622503_at, orthologous to the query gene, Ptp.7649.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	1622503_at	At4g37970	-	-	9e-8	At4g37990	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	O.I.	H.G.	S.X.	Please select
0.70	88.6	1619157_at	At4g37970	inward rectifying shaker-like K+ channel	-	3e-66	At4g18290	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1621987_at	At4g37970	hypothetical protein LOC100262309	-	9e-15	At1g11670	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1622209_at	At4g37970	hypothetical protein LOC100254328	-	6e-39	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1619741_at	At4g37970	hypothetical protein LOC100259693	-	4e-50	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1606913_at	At4g37970	zeaxanthin epoxidase	-	3e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1607624_at	At4g37970	hypothetical protein LOC100255131	-	6e-15	At5g12470	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1618563_at	At4g37970	hypothetical protein LOC100267134	-	3e-7	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	1622682_at	At4g37970	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620398_at	At4g37970	hypothetical LOC100263767	-	1e-3	At3g09690	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1618419_at	At4g37970	hypothetical protein LOC100252541	-	3e-1	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1606454_at	At4g37970	hypothetical protein LOC100252385	-	2e-13	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.27	34.0	1609508_at	At4g37970	hypothetical protein LOC100242787	-	4e-3	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1619526_at	At4g37970	hypothetical protein LOC100247097	-	1e-48	At3g11170	FAD7 (FATTY ACID DESATURASE 7)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1609624_at	At4g37970	-	-	2e-27	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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