Co-expression analysis

Gene ID	Ptp.7649.1.S1_at
Gene name	cinnamyl alcohol dehydrogenase-like protein
Homology with Arabidopsis	Similar to At4g37970: CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) (HF=5e-6)
Module size	6 genes
NF	0.76
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.7649.1.S1_at	BI125474	cinnamyl alcohol dehydrogenase-like protein	-	5e-6	At4g37970	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.99	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7225.3.S1_a_at, orthologous to the query gene, Ptp.7649.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	Ta.7225.3.S1_a_at	At4g37970	-	-	1e-3	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.7225.3.S1_x_at	At4g37970	-	-	1e-3	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.119710.1.A1_at	At4g37970	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.32621.2.S1_at	At4g37970	-	-	7e-2	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.30903.1.A1_at	At4g37970	-	-	4e-3	At4g25830	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.8901.1.A1_s_at	At4g37970	-	-	2e+0	At5g45440	disease resistance protein-related	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.22335.2.S1_at	At4g37970	-	-	7e-2	At5g67120	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3771.1.S1_at	At4g37970	-	-	6e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.22335.2.S1_x_at	At4g37970	-	-	7e-2	At5g67120	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.7225.3.S1_at	At4g37970	-	-	1e-3	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.6286.1.S1_at	At4g37970	-	-	1e-4	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.6482.1.A1_at	At4g37970	-	-	4e-8	At3g12060	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.7225.2.S1_a_at	At4g37970	-	-	6e-3	At1g19330	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.24437.1.A1_at	At4g37970	-	-	4e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.24208.1.A1_at	At4g37970	-	-	2e+1	At5g47960	ATRABA4C	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.3246.1.S1_at	At4g37970	-	-	6e+0	At4g25210	transcription regulator	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.20537.1.S1_x_at	At4g37970	-	-	5e-4	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.11470.1.A1_at	At4g37970	-	-	3e+0	At3g05460	sporozoite surface protein-related	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.5003.1.S1_s_at	At4g37970	-	-	1e+0	At5g65300	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.5112.1.A1_at	At4g37970	-	-	3e-9	At5g55910	D6PK (D6 PROTEIN KINASE)	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.5363.1.S1_at	At4g37970	-	-	9e-1	At3g62090	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.6578.1.S1_at	At4g37970	-	-	5e-8	At1g12230	transaldolase, putative	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.111169.1.S1_at	At4g37970	-	-	9e-2	At1g76050	pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.7690.1.S1_at	At4g37970	-	-	1e+0	At1g09380	integral membrane family protein / nodulin MtN21-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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