Co-expression analysis

Gene ID	Ptp.7649.1.S1_at
Gene name	cinnamyl alcohol dehydrogenase-like protein
Homology with Arabidopsis	Similar to At4g37970: CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) (HF=5e-6)
Module size	6 genes
NF	0.76
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.7649.1.S1_at	BI125474	cinnamyl alcohol dehydrogenase-like protein	-	5e-6	At4g37970	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.98	Ptp.4898.1.S1_at	BI126840	-	-	1e-16	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	PtpAffx.26369.3.S1_s_at	CK104729	hypothetical protein	-	2e+0	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.98	Ptp.4880.1.S1_at	CK089952	-	-	1e+0	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.99	PtpAffx.4669.4.S1_at	BU811735	-	-	5e+0	At5g63580	FLS2 (FLAVONOL SYNTHASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	Ptp.5976.1.S1_at	CF230441	-	-	2e+0	At4g12480	pEARLI 1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig21289_at, orthologous to the query gene, Ptp.7649.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	Contig21289_at	At4g37970	-	-	4e-1	At1g67260	TCP1	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig15831_at	At4g37970	-	-	1e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig11108_at	At4g37970	-	-	8e-4	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig5626_s_at	At4g37970	-	-	2e+0	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig7940_x_at	At4g37970	-	-	9e-43	At4g25550	protein binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig13522_at	At4g37970	-	-	4e-17	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig9191_at	At4g37970	-	-	2e+0	At2g18200	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig11078_at	At4g37970	-	-	5e-5	At5g67520	adenylylsulfate kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig10540_at	At4g37970	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig14021_at	At4g37970	-	-	4e-2	At3g59300	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig7746_at	At4g37970	-	-	2e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	HVSMEb0002H03r2_s_at	At4g37970	-	-	5e-5	At3g24890	ATVAMP728	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig19167_s_at	At4g37970	-	-	1e+1	At5g55550	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig14229_at	At4g37970	-	-	4e-2	At4g18910	NIP1	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig4722_at	At4g37970	-	-	5e-21	At5g41010	NRPB12	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig716_at	At4g37970	-	-	1e+0	At3g02840	immediate-early fungal elicitor family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig19815_at	At4g37970	-	-	7e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig16054_at	At4g37970	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig5078_at	At4g37970	-	-	1e-10	At1g60900	U2 snRNP auxiliary factor large subunit, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig12596_at	At4g37970	-	-	5e-48	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig13901_at	At4g37970	-	-	4e-1	At1g10140	-	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig12004_at	At4g37970	-	-	2e-1	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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