CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.7649.1.S1_at

Gene name cinnamyl alcohol dehydrogenase-like protein
Homology with Arabidopsis Similar to At4g37970: CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) (HF=5e-6)

Module size 6 genes

NF 0.76

%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.98 Ptp.7649.1.S1_at BI125474 cinnamyl alcohol dehydrogenase-like protein - 5e-6 At4g37970 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) O.I. H.G. S.X.
0.91 99.2 0.98 Ptp.4898.1.S1_at BI126840 - - 1e-16 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) O.I. H.G. S.X.
0.77 94.9 0.98 PtpAffx.26369.3.S1_s_at CK104729 hypothetical protein - 2e+0 At2g34160 nucleic acid binding O.I. H.G. S.X.
0.71 92.6 0.98 Ptp.4880.1.S1_at CK089952 - - 1e+0 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.61 87.0 0.99 PtpAffx.4669.4.S1_at BU811735 - - 5e+0 At5g63580 FLS2 (FLAVONOL SYNTHASE 2) O.I. H.G. S.X.
0.50 78.6 0.98 Ptp.5976.1.S1_at CF230441 - - 2e+0 At4g12480 pEARLI 1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.2 97.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8 86.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g37970, orthologous to the query gene, Ptp.7649.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. H.G. S.X.
0.57 73.8 At2g37900 818366 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. H.G. S.X.
0.55 70.6 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. H.G. S.X.
0.40 50.8 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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