CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.7632.1.S1_at

Gene name ZIP transporter
Homology with Arabidopsis Similar to At5g59520: ZIP2 (HF=2e-1)

Module size 8 genes

NF 0.48

%ile 78.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 0.94 Ptp.7632.1.S1_at DN497977 ZIP transporter - 2e-1 At5g59520 ZIP2 O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.224333.1.S1_x_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.59 84.9 0.94 PtpAffx.224333.1.S1_at pmrna42787 hypothetical protein - 1e-1 At1g74090 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) O.I. H.G. S.X.
0.50 78.6 0.95 Ptp.7764.1.S1_at DN489656 hypothetical protein - 5e+0 At5g49170 unknown protein O.I. H.G. S.X.
0.47 74.6 0.94 Ptp.789.1.S1_at CK089311 hypothetical protein - 8e-8 At2g41820 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.47 74.6 0.94 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.46 73.7 0.95 PtpAffx.106134.1.S1_at DN495981 - - 5e-2 At2g17240 unknown protein O.I. H.G. S.X.
0.25 43.6 0.94 Ptp.2482.1.S1_at CF229547 phenylalanine amonnia lyase - 2e-2 At2g37040 pal1 (Phe ammonia lyase 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	87.0	0.94	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.
0.67	91.1	0.94	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.59	84.9	0.94	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.
0.47	74.6	0.94	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.47	74.6	0.94	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.46	73.7	0.95	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.64	88.4	0.93	PtpAffx.908.1.S1_at	CV263697	hypothetical protein	-	5e+0	At4g33720	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.56	83.9	0.93	PtpAffx.203780.1.S1_at	pmrna7465	hypothetical protein	-	1e-4	At3g09020	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	O.I.	H.G.	S.X.
0.55	82.2	0.95	Ptp.4669.1.S1_at	CK088332	-	-	8e-13	At3g53190	pectate lyase family protein	O.I.	H.G.	S.X.
0.47	74.6	0.95	PtpAffx.54313.2.S1_at	BU895504	hypothetical protein	-	6e-4	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.
0.43	69.7	0.92	Ptp.6755.1.S1_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.43	69.7	0.94	PtpAffx.16306.1.S1_at	DN497208	cytochrome P450	-	3e-1	At3g26320	CYP71B36	O.I.	H.G.	S.X.
0.41	67.7	0.91	Ptp.2993.1.S1_at	CX658401	hypothetical protein	-	7e-12	At3g02885	GASA5 (GAST1 PROTEIN HOMOLOG 5)	O.I.	H.G.	S.X.
0.40	67.0	0.94	Ptp.2707.1.S1_at	BU826219	hypothetical protein	-	1e-1	At1g78520	-	O.I.	H.G.	S.X.
0.39	64.6	0.92	PtpAffx.153576.1.A1_at	CV251940	hypothetical protein	-	1e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	O.I.	H.G.	S.X.
0.38	63.7	0.93	Ptp.6755.1.S1_x_at	AY378090.1	hypothetical protein	-	6e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.200837.1.S1_at	pmrna1629	hypothetical protein	-	6e-4	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	O.I.	H.G.	S.X.
0.36	61.6	0.96	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.35	59.7	0.93	PtpAffx.205796.1.S1_at	pmrna11458	hypothetical protein	-	5e-2	At1g19715	jacalin lectin family protein	O.I.	H.G.	S.X.
0.35	59.7	0.94	Ptp.3671.1.S1_at	CK112025	hypothetical protein	-	3e-2	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.26773.2.A1_at	CF232644	hypothetical protein	-	1e+0	At4g12840	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.48228.1.A1_at	CV246219	hypothetical protein	-	5e-1	At3g05700	-	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.213823.1.S1_at	pmrna26979	hypothetical protein	-	3e-2	At5g64240	AtMC3 (metacaspase 3)	O.I.	H.G.	S.X.
0.32	55.2	0.93	PtpAffx.200207.1.S1_at	pmrna393	hypothetical protein	-	2e-28	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.32	55.2	0.95	Ptp.2544.1.A1_at	CK087698	hypothetical protein	-	1e-12	At3g24660	TMKL1 (transmembrane kinase-like 1)	O.I.	H.G.	S.X.
0.31	53.7	0.92	Ptp.4115.1.S1_at	AJ777870	hypothetical protein	-	1e-1	At1g72150	PATL1 (PATELLIN 1)	O.I.	H.G.	S.X.
0.31	53.7	0.93	PtpAffx.13697.2.S1_at	CK095635	hypothetical protein	-	3e-4	At2g47860	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.1704.2.S1_at	CK088122	-	-	3e-5	At1g28400	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.11483.2.A1_at	CK106946	hypothetical protein	-	7e-2	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.
0.30	52.0	0.91	Ptp.6471.1.S1_at	CN549809	-	-	2e-9	At1g09610	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.93	PtpAffx.73634.1.S1_s_at	DN502654	hypothetical protein	-	6e-55	At2g47500	ATP binding / microtubule motor	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.105429.1.S1_at	CK095464	-	-	4e+0	At5g61100	-	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.98636.1.S1_at	BU836919	sulfate/bicarbonate/oxalate exchanger and transporter sat-1	-	2e+0	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.
0.29	50.5	0.93	Ptp.325.1.A1_s_at	CK088352	cytochrome P450	-	7e-3	At1g01190	CYP78A8	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 96.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.7	96.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.7632.1.S1_at
Gene name	ZIP transporter
Homology with Arabidopsis	Similar to At5g59520: ZIP2 (HF=2e-1)
Module size	8 genes
NF	0.48
%ile	78.4

Co-expression analysis

Gene ID Ptp.7632.1.S1_at Gene name ZIP transporter Homology with ArabidopsisSimilar to At5g59520: ZIP2 (HF=2e-1) Module size 8 genes NF 0.48 %ile 78.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.7632.1.S1_at

Gene name ZIP transporter
Homology with Arabidopsis Similar to At5g59520: ZIP2 (HF=2e-1)

Module size 8 genes

NF 0.48

%ile 78.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays