Co-expression analysis

Gene ID	Ptp.7632.1.S1_at
Gene name	ZIP transporter
Homology with Arabidopsis	Similar to At5g59520: ZIP2 (HF=2e-1)
Module size	8 genes
NF	0.48
%ile	78.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.94	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.42456.1.S1_at, orthologous to the query gene, Ptp.7632.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.42456.1.S1_at	At5g59520	-	-	7e-1	At3g26310	CYP71B35	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.4132.1.S1_at	At5g59520	-	-	9e-13	At5g65000	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.10437.1.A1_at	At5g59520	-	-	1e+0	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.31638.1.S1_at	At5g59520	-	-	8e+0	At5g39510	SGR4 (SHOOT GRAVITROPSIM 4)	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.101819.1.S1_at	At5g59520	-	-	3e+0	At4g01915	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.30679.1.S1_at	At5g59520	-	-	3e+0	At3g06435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.26958.1.S1_at	At5g59520	-	-	2e-44	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6692.1.S1_at	At5g59520	-	-	9e-10	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.12041.1.S1_at	At5g59520	-	-	2e-4	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.19219.1.S1_a_at	At5g59520	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.27987.1.S1_a_at	At5g59520	-	-	2e+0	At2g01100	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.3633.2.A1_a_at	At5g59520	-	-	2e-5	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.3570.1.S1_at	At5g59520	-	-	4e+0	At4g00530	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.11680.1.S1_at	At5g59520	-	-	5e-1	At3g50880	HhH-GPD base excision DNA repair family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.9147.1.S1_at	At5g59520	-	-	2e-1	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.10039.1.S1_at	At5g59520	-	-	3e+0	At5g05280	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.13272.1.A1_at	At5g59520	-	-	6e+0	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.10267.1.A1_at	At5g59520	-	-	1e+1	At2g35035	URED (urease accessory protein D)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.1640.1.S1_a_at	At5g59520	-	-	3e-101	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.105815.1.S1_at	At5g59520	-	-	3e-1	At5g57080	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.9654.1.S1_at	At5g59520	-	-	5e-28	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.8833.1.S1_at	At5g59520	-	-	8e-1	At4g17215	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.27032.1.S1_at	At5g59520	-	-	6e-8	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.13405.1.A1_at	At5g59520	-	-	1e+1	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.7323.1.A1_at	At5g59520	-	-	5e-39	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.30645.1.S1_s_at	At5g59520	-	-	3e-3	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.2319.2.S1_x_at	At5g59520	-	-	8e+0	At4g08270	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.28732.1.S1_a_at	At5g59520	-	-	6e-144	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.13272.1.A1_s_at	At5g59520	-	-	6e+0	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.6660.1.A1_at	At5g59520	-	-	5e-6	At1g55150	DEAD box RNA helicase, putative (RH20)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.9972.1.S1_at	At5g59520	-	-	1e-2	At2g30100	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.18143.1.A1_at	At5g59520	-	-	1e+0	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.28393.3.S1_x_at	At5g59520	-	-	4e-21	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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