Co-expression analysis

Gene ID	Ptp.7632.1.S1_at
Gene name	ZIP transporter
Homology with Arabidopsis	Similar to At5g59520: ZIP2 (HF=2e-1)
Module size	8 genes
NF	0.48
%ile	78.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.94	Ptp.7632.1.S1_at	DN497977	ZIP transporter	-	2e-1	At5g59520	ZIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.224333.1.S1_x_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	PtpAffx.224333.1.S1_at	pmrna42787	hypothetical protein	-	1e-1	At1g74090	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.7764.1.S1_at	DN489656	hypothetical protein	-	5e+0	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.789.1.S1_at	CK089311	hypothetical protein	-	8e-8	At2g41820	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.478.1.A1_at	CK087253	hypothetical protein	-	4e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.106134.1.S1_at	DN495981	-	-	5e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.59620.1.S1_at, orthologous to the query gene, Ptp.7632.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	GmaAffx.59620.1.S1_at	At5g59520	-	-	8e-1	At5g16920	-	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.51885.1.S1_at	At5g59520	-	-	3e+0	At5g27247	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.2347.2.S1_at	At5g59520	-	-	5e-44	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.64326.1.S1_at	At5g59520	-	-	8e-1	At2g17845	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.52184.1.S1_at	At5g59520	-	-	3e-7	At2g37840	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.81613.1.S1_at	At5g59520	-	-	2e-11	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.5115.1.S1_at	At5g59520	-	-	4e-27	At3g23540	-	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.80588.1.S1_at	At5g59520	-	-	3e-1	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.45252.2.S1_at	At5g59520	-	-	3e-10	At3g14050	RSH2 (RELA-SPOT HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.25651.1.A1_at	At5g59520	-	-	1e-8	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.4305.3.S1_a_at	At5g59520	-	-	5e-8	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.38761.1.S1_at	At5g59520	-	-	2e-17	At1g54490	XRN4 (EXORIBONUCLEASE 4)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.4382.3.S1_at	At5g59520	-	-	9e-18	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.75287.1.S1_at	At5g59520	-	-	2e-1	At4g01000	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.11850.2.S1_at	At5g59520	-	-	8e-18	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.68900.1.S1_at	At5g59520	-	-	1e+0	At2g30760	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.5237.2.S1_at	At5g59520	-	-	5e-6	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.88272.3.S1_at	At5g59520	-	-	1e-41	At4g19110	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.92886.1.S1_at	At5g59520	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.42058.1.S1_at	At5g59520	-	-	3e-13	At1g61040	VIP5 (vernalization independence 5)	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.90162.1.S1_s_at	At5g59520	-	-	2e-11	At2g28840	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.56265.1.S1_at	At5g59520	-	-	1e-7	At5g19400	SMG7	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.6034.2.S1_at	At5g59520	-	-	2e-63	At3g19420	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.6196.2.S1_a_at	At5g59520	-	-	2e-35	At2g14120	dynamin-like protein 2b (ADL2b)	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.65140.1.S1_at	At5g59520	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.66282.1.S1_at	At5g59520	-	-	9e-1	At5g15240	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.4166.1.S1_s_at	At5g59520	-	-	2e-5	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.14185.1.S1_at	At5g59520	-	-	7e-23	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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