Co-expression analysis

Gene ID	Ptp.7603.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g31120: KUP10 (HF=6e-2)
Module size	6 genes
NF	0.36
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	Ptp.7603.1.S1_at	DN494879	-	-	6e-2	At1g31120	KUP10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.54760.1.A1_at	DN488946	hypothetical protein	-	3e-11	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	Ptp.6822.1.S1_at	DN500216	-	-	5e+0	At5g26740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	PtpAffx.77707.1.A1_at	CK097241	-	-	4e-1	At1g33910	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	Ptp.6461.1.A1_at	CX282788	hypothetical protein	-	3e-50	At1g47830	clathrin coat assembly protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.135916.1.A1_at	CK096317	hypothetical protein	-	4e-8	At4g35530	phosphatidylinositolglycan-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.3	96.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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