Co-expression analysis

Gene ID	Ptp.7585.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g02280: synbindin, putative (HF=5e-44)
Module size	7 genes
NF	0.45
%ile	74.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.96	Ptp.7585.2.S1_s_at	CK092437	hypothetical protein	-	5e-44	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.89262.2.S1_a_at	CV237169	hypothetical protein	-	1e-13	At3g06790	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.1770.11.A1_a_at	CV246042	-	-	2e-36	At2g29560	enolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.151685.1.A1_at	DN485825	hypothetical protein	-	2e-1	At3g14280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	Ptp.909.1.A1_s_at	CK089373	hypothetical protein	-	1e+0	At2g25409	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.80187.1.S1_a_at	DN497131	hypothetical protein	-	3e-21	At4g22350	ubiquitin carboxyl-terminal hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	Ptp.6236.1.S1_at	CV245192	hypothetical protein	-	1e-44	At3g22320	NRPB5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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