Co-expression analysis

Gene ID Ptp.7547.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g53120: SPDS3 (SPERMIDINE SYNTHASE 3) (HF=3e-29)
Module size 19 genes
NF 0.21
%ile 38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.93Ptp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.2950.50.96PtpAffx.213097.1.S1_s_atpmrna25629hypothetical protein-8e-29At5g52410unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.158765.1.S1_atCN519725hypothetical protein-2e-6At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2543.60.96PtpAffx.202784.1.S1_x_atpmrna5536hypothetical protein-2e-124At1g10940SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)O.I.H.G.S.X.
0.2543.60.96PtpAffx.144348.2.S1_atCF229054hypothetical protein-6e-20At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.2034.60.94PtpAffx.144348.1.S1_atCK091378--2e-12At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.1932.70.97PtpAffx.95687.1.A1_atDN496546hypothetical protein-4e-4At2g25010unknown proteinO.I.H.G.S.X.
0.1932.70.96PtpAffx.106168.1.S1_atDN494299--2e+0At2g34900IMB1 (IMBIBITION-INDUCIBLE 1)O.I.H.G.S.X.
0.1932.70.97Ptp.3511.1.S1_s_atDN492443hypothetical protein-5e-1At2g41280M10O.I.H.G.S.X.
0.1729.10.95PtpAffx.86064.1.S1_atCV279515hypothetical protein-3e-24At5g65720NFS1O.I.H.G.S.X.
0.1525.30.96PtpAffx.18100.2.A1_a_atCV241150hypothetical protein-1e+0At1g42990ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)O.I.H.G.S.X.
0.1525.30.97PtpAffx.160266.1.A1_s_atCV240516histone acetyltransferase-4e-97At5g09740HAM2 (histone acetyltransferase of the MYST family 2)O.I.H.G.S.X.
0.1423.50.97PtpAffx.23095.1.S1_atCX177404hypothetical protein-1e-3At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)O.I.H.G.S.X.
0.1423.50.96PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.1423.50.96Ptp.5420.1.S1_s_atCK099218hypothetical protein-2e-30At1g63770peptidase M1 family proteinO.I.H.G.S.X.
0.1321.60.96PtpAffx.35764.2.A1_a_atCV256815hypothetical protein-3e-33At1g17350auxin-induced-related / indole-3-acetic acid induced-relatedO.I.H.G.S.X.
0.1219.60.96PtpAffx.105080.1.S1_s_atBP923549hypothetical protein-5e-38At1g55680WD-40 repeat family proteinO.I.H.G.S.X.
0.1219.60.95PtpAffx.97994.1.S1_s_atCX184253hypothetical protein-3e-14At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.0914.60.96PtpAffx.132468.1.S1_s_atDN498520--4e-1At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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