Co-expression analysis

Gene ID	Ptp.7529.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g28460: unknown protein (HF=1e-45)
Module size	7 genes
NF	0.61
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.96	Ptp.7529.1.S1_at	DN495630	hypothetical protein	-	1e-45	At3g28460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.95	PtpAffx.127102.1.A1_s_at	CV271691	hypothetical protein	-	3e+0	At5g46530	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	Ptp.6138.1.S1_at	CK094815	-	-	4e-1	At1g53090	SPA4 (SPA1-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	Ptp.2150.1.S1_at	CK089522	hypothetical protein	-	2e+0	At4g09965	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	PtpAffx.86646.1.S1_at	BU891442	-	-	2e+0	At5g51210	OLEO3 (OLEOSIN3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.132098.1.A1_at	DN490875	hypothetical protein	-	2e-5	At1g17220	FUG1 (fu-gaeri1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.1108.2.A1_at	CK090142	-	-	9e-8	At1g25440	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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