Co-expression analysis

Gene ID Ptp.7512.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to Atcg00820: - (HF=1e-43)
Module size 6 genes
NF 0.43
%ile 71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.95Ptp.7512.1.S1_s_atCK112401hypothetical protein-1e-43Atcg00820-O.I.H.G.S.X.
0.5784.20.93PtpAffx.12564.1.A1_s_atCV245340hypothetical protein-2e-64Atcg00170-O.I.H.G.S.X.
0.5582.20.93PtpAffx.42041.1.A1_atDN487817--9e-1At2g21910CYP96A5O.I.H.G.S.X.
0.4471.90.94Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-O.I.H.G.S.X.
0.2543.60.95PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8O.I.H.G.S.X.
0.1830.80.95PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.199.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage