Co-expression analysis

Gene ID	Ptp.7508.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g16668: unknown protein (HF=4e+0)
Module size	13 genes
NF	0.26
%ile	47.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.84	Ptp.7508.1.S1_at	CK109400	-	-	4e+0	At2g16668	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.201423.1.S1_at	pmrna2810	hypothetical protein	-	3e-10	At3g53750	ACT3 (actin 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.87	PtpAffx.209070.1.S1_at	pmrna17943	hypothetical protein	-	2e-177	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.88	PtpAffx.28066.1.S1_at	CK107223	-	-	5e+0	At2g29770	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.87	PtpAffx.216803.1.S1_at	pmrna31830	hypothetical protein	-	4e-4	At5g01860	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.86	PtpAffx.16175.1.S1_at	DN496213	-	-	9e-1	At3g48209	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.202125.1.S1_at	pmrna4247	hypothetical protein	-	2e-40	At3g60460	DUO1 (DUO POLLEN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.200481.1.S1_at	pmrna970	hypothetical protein	-	1e+0	At1g27590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.213927.1.S1_at	pmrna27155	hypothetical protein	-	6e+0	At5g16940	carbon-sulfur lyase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.86	PtpAffx.222745.1.S1_at	pmrna40368	hypothetical protein	-	2e+0	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.214709.1.S1_at	pmrna28532	hypothetical protein	-	9e-1	At4g32120	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.88	PtpAffx.95569.1.A1_at	CV241413	-	-	1e-3	At5g64880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.85	PtpAffx.82415.1.A1_at	CV247167	-	-	3e+0	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.5	83.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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