Co-expression analysis

Gene ID	Ptp.7478.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g02220: unknown protein (HF=2e-3)
Module size	8 genes
NF	0.49
%ile	78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.94	Ptp.7478.1.S1_at	BU866961	hypothetical protein	-	2e-3	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.219775.1.S1_x_at	pmrna35842	hypothetical protein	-	5e-1	At5g03380	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.94	PtpAffx.28701.2.S1_s_at	BU867887	hypothetical protein	-	1e-13	At5g01520	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.84646.1.S1_at	DN483684	hypothetical protein	-	2e+0	At4g32208	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.95	PtpAffx.22200.2.S1_at	CV241652	hypothetical protein	-	2e-19	At5g26200	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	Ptp.3530.1.S1_at	CV262873	hypothetical protein	-	1e-1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.49298.2.S1_s_at	AJ768916	hypothetical protein	-	9e-2	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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