Co-expression analysis

Gene ID	Ptp.7196.1.S1_at
Gene name	cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone /// hypothetical protein
Homology with Arabidopsis	Similar to At3g50660: DWF4 (DWARF 4) (HF=3e-22)
Module size	9 genes
NF	0.17
%ile	31.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	97.1	0.89	Ptp.7196.1.S1_at	CV280598	cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone /// hypothetical protein	-	3e-22	At3g50660	DWF4 (DWARF 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.92	PtpAffx.209262.1.S1_s_at	pmrna18304	hypothetical protein	-	2e+0	At1g19960	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.200743.1.S1_at	pmrna1428	-	-	2e-4	At3g24290	AMT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	Ptp.7183.1.A1_at	CV252516	hypothetical protein	-	3e-1	At1g30020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.92	PtpAffx.39391.1.S1_at	CX184051	hypothetical protein	-	1e-13	At5g67385	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.91	PtpAffx.71066.1.A1_s_at	AJ767242	1-aminocyclopropane-1-carboxylate	-	3e-10	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.71886.3.S1_a_at	CF937025	methionine sulfoxide reductase type /// methionine sulfoxide reductase type	-	4e-7	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.220787.1.S1_s_at	pmrna37219	hypothetical protein	-	8e-31	At4g18240	ATSS4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.91	Ptp.2572.1.S1_at	CV275878	-	-	2e+0	At4g29290	LCR26 (Low-molecular-weight cysteine-rich 26)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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