Co-expression analysis

Gene ID	Ptp.7181.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g49570: peroxidase, putative (HF=2e-6)
Module size	6 genes
NF	0.54
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.95	Ptp.7181.1.S1_at	DN488307	hypothetical protein	-	2e-6	At1g49570	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.95	Ptp.6077.1.S1_s_at	BI122891	hypothetical protein	-	1e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	Ptp.2226.1.S1_at	CK089488	hypothetical protein	-	3e-3	At1g64160	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	Ptp.987.1.S1_at	BU895364	-	-	5e-29	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.6340.1.S1_at	BU888207	hypothetical protein	-	2e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.204632.1.S1_at	pmrna9105	hypothetical protein	-	1e-1	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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