Co-expression analysis

Gene ID	Ptp.7160.2.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g04000: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e+0)
Module size	6 genes
NF	0.77
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	Ptp.7160.2.A1_a_at	CV239819	hypothetical protein	-	1e+0	At3g04000	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	Ptp.5145.1.S1_at	CK094062	hypothetical protein	-	2e+0	At1g69588	CLE45 (CLAVATA3/ESR-RELATED 45)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.94	Ptp.7160.1.S1_s_at	CV243014	hypothetical protein	-	8e-3	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	PtpAffx.209542.1.S1_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.200872.1.S1_at	pmrna1711	cytochrome P450	-	2e-1	At1g78490	CYP708A3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.4	95.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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