Co-expression analysis

Gene ID	Ptp.7158.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g64310: AGP1 (ARABINOGALACTAN PROTEIN 1) (HF=8e+0)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.95	Ptp.7158.1.S1_at	CV246958	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.2013.1.S1_at	CV252156	-	-	6e-3	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.249.4.A1_at	AY780431.1	-	-	9e-13	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	Ptp.1541.1.S1_at	CK109591	-	-	8e-4	At1g29670	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	Ptp.2465.1.S1_at	CK092035	cinnamoyl CoA reductase-like protein	-	1e-2	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.96	Ptp.3815.1.S1_at	DN488408	hypothetical protein	-	2e+0	At3g36659	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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