Co-expression analysis

Gene ID	Ptp.7034.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g13870: EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) (HF=5e-31)
Module size	6 genes
NF	0.25
%ile	45.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.85	Ptp.7034.1.S1_at	BU866834	hypothetical protein	-	5e-31	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.203256.1.S1_at	pmrna6447	tir-nbs resistance protein	-	4e-10	At4g23440	nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.89	Ptp.584.1.A1_at	CK089019	hypothetical protein	-	2e-7	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	PtpAffx.24378.1.S1_at	DN501615	hypothetical protein	-	4e-13	At5g62150	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.91	Ptp.7912.1.S1_at	CV281381	autoinhibited H+ ATPase	-	8e-18	At4g30190	AHA2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	PtpAffx.20287.1.S1_at	CK091860	hypothetical protein	-	3e-11	At5g41315	GL3 (GLABROUS 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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