Co-expression analysis

Gene ID	Ptp.6905.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=1e-7)
Module size	26 genes
NF	0.32
%ile	56.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	0.92	Ptp.6905.1.A1_s_at	CV233868	hypothetical protein	-	1e-7	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	Ptp.4237.1.S1_at	DN499915	hypothetical protein	-	2e-13	At5g59850	40S ribosomal protein S15A (RPS15aF)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.95	PtpAffx.26833.1.A1_s_at	CV251572	hypothetical protein	-	2e-2	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	PtpAffx.1106.1.A1_s_at	CV236443	-	-	3e-17	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.93	PtpAffx.122937.1.A1_s_at	DN490378	hypothetical protein	-	7e-5	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.95	PtpAffx.878.1.S1_at	BP929910	hypothetical protein	-	2e-99	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.94	Ptp.4460.1.S1_at	CV253940	hypothetical protein	-	2e-56	At1g70310	SPDS2 (spermidine synthase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.96	PtpAffx.1025.1.A1_x_at	CV251532	hypothetical protein	-	2e-21	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.993.4.S1_a_at	CF229606	hypothetical protein	-	7e-67	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.4048.1.S1_s_at	CF232419	hypothetical protein	-	2e-27	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	PtpAffx.207283.1.S1_at	pmrna14451	hypothetical protein	-	1e-33	At4g28200	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.63184.1.A1_s_at	CV263226	hypothetical protein	-	5e-25	At1g29250	nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	Ptp.2338.1.S1_s_at	CK092189	hypothetical protein	-	5e+0	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.131810.1.S1_at	DN491628	hypothetical protein	-	1e-14	At3g23620	brix domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	Ptp.47.1.A1_at	CV247254	hypothetical protein	-	7e-49	At1g57860	60S ribosomal protein L21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.116902.1.S1_at	CV260359	hypothetical protein	-	5e-10	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	Ptp.7553.1.S1_a_at	CV265691	hypothetical protein	-	5e-85	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.29901.1.S1_at	CX176700	hypothetical protein	-	3e-87	At4g24830	arginosuccinate synthase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.5315.1.A1_s_at	CV236250	hypothetical protein	-	1e-90	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.95	PtpAffx.14802.1.A1_s_at	CV250490	hypothetical protein	-	5e-62	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.52208.1.A1_at	CV276617	hypothetical protein	-	5e-7	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.40682.4.S1_a_at	CV261837	hypothetical protein	-	4e+0	At5g10780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.96	Ptp.5765.1.S1_s_at	CV236333	hypothetical protein	-	3e-30	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	PtpAffx.25566.1.S1_at	CV237120	hypothetical protein	-	5e-20	At4g26780	AR192	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.95	Ptp.7884.1.A1_s_at	CV256864	hypothetical protein	-	4e-7	At3g17910	SURF1 (SURFEIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.94	PtpAffx.56864.1.S1_at	CV254655	hypothetical protein	-	4e-1	At1g75200	flavodoxin family protein / radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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