Co-expression analysis

Gene ID Ptp.6822.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g26740: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.35
%ile 61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.94Ptp.6822.1.S1_atDN500216--5e+0At5g26740unknown proteinO.I.H.G.S.X.
0.5582.20.95PtpAffx.77707.1.A1_atCK097241--4e-1At1g33910avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinO.I.H.G.S.X.
0.5078.60.95Ptp.7603.1.S1_atDN494879--6e-2At1g31120KUP10O.I.H.G.S.X.
0.2747.10.95PtpAffx.26481.1.S1_a_atBU869849hypothetical protein-3e-30At1g33490unknown proteinO.I.H.G.S.X.
0.2340.50.95Ptp.7659.1.S1_atDN488737hypothetical protein-2e-12At3g15410leucine-rich repeat family proteinO.I.H.G.S.X.
0.2034.60.96Ptp.3446.1.S1_atDN502970hypothetical protein-1e-1At3g11773electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.495.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage