Co-expression analysis

Gene ID Ptp.6512.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=2e-92)
Module size 6 genes
NF 0.36
%ile 62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-O.I.H.G.S.X.
0.5078.60.94PtpAffx.27285.1.A1_s_atCA923948hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4067.00.94Ptp.7512.1.S1_s_atCK112401hypothetical protein-1e-43Atcg00820-O.I.H.G.S.X.
0.2543.60.95PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8O.I.H.G.S.X.
0.2340.50.94PtpAffx.216450.1.S1_atpmrna31230hypothetical protein-2e-4Atcg00500-O.I.H.G.S.X.
0.1830.80.95PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.60.92PtpAffx.16999.1.S1_x_atCV275883hypothetical protein-2e-43At1g08830CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.4673.70.93PtpAffx.8929.1.A1_s_atDN485457hypothetical protein-3e-24At3g53580diaminopimelate epimerase family proteinO.I.H.G.S.X.
0.4369.70.93PtpAffx.12564.1.A1_s_atCV245340hypothetical protein-2e-64Atcg00170-O.I.H.G.S.X.
0.4067.00.93PtpAffx.202885.1.S1_s_atpmrna5701hypothetical protein-1e-121Atcg00170-O.I.H.G.S.X.
0.4067.00.97PtpAffx.1980.1.S1_a_atCV250106hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.
0.3661.60.91PtpAffx.221510.1.S1_atpmrna38429hypothetical protein-7e-23At3g13690protein kinase family proteinO.I.H.G.S.X.
0.3661.60.93PtpAffx.42041.1.A1_atDN487817--9e-1At2g21910CYP96A5O.I.H.G.S.X.
0.3661.60.96Ptp.6781.1.S1_s_atBU832419hypothetical protein-5e-23At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)O.I.H.G.S.X.
0.3559.70.88PtpAffx.150939.1.S1_atBI129830hypothetical protein-2e-4At4g01880methyltransferaseO.I.H.G.S.X.
0.3559.70.92Ptp.894.1.S1_atCK088004--1e+0At1g68500unknown proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.206534.1.S1_atpmrna12965hypothetical protein-3e-45At2g24120SCA3 (SCABRA 3)O.I.H.G.S.X.
0.3153.70.92Ptp.7505.1.S1_atCV275500--1e-29Atcg00065-O.I.H.G.S.X.
0.3153.70.92PtpAffx.6054.1.S1_atCA821641--7e-9At2g12905unknown proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.11317.2.A1_a_atBU878325hypothetical protein-5e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2950.50.93PtpAffx.138587.1.A1_atCV255369hypothetical protein-1e+0At3g61530PANB2O.I.H.G.S.X.
0.2950.50.94PtpAffx.210675.1.S1_atpmrna20933hypothetical protein-1e-65At4g24970ATP-binding region, ATPase-like domain-containing proteinO.I.H.G.S.X.
0.2747.10.92PtpAffx.203389.1.S1_atpmrna6744--3e-3At5g13960SUVH4 (SU(VAR)3-9 HOMOLOG 4)O.I.H.G.S.X.
0.2747.10.93Ptp.1965.1.S1_s_atCV270322hypothetical protein-5e-11At4g21960PRXR1O.I.H.G.S.X.
0.2645.20.89PtpAffx.114492.1.A1_atCV256891--3e+0At2g01580unknown proteinO.I.H.G.S.X.
0.2543.60.90PtpAffx.75431.1.A1_atCV270541--2e-1At5g08315-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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