Co-expression analysis

Gene ID Ptp.6512.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=2e-92)
Module size 6 genes
NF 0.36
%ile 62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95Ptp.6512.1.S1_s_atCK112728--2e-92Atcg00790-O.I.H.G.S.X.
0.5078.60.94PtpAffx.27285.1.A1_s_atCA923948hypothetical protein-9e-58At1g80670transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4067.00.94Ptp.7512.1.S1_s_atCK112401hypothetical protein-1e-43Atcg00820-O.I.H.G.S.X.
0.2543.60.95PtpAffx.30207.1.S1_s_atCV257448hypothetical protein-2e-61At3g11730ATFP8O.I.H.G.S.X.
0.2340.50.94PtpAffx.216450.1.S1_atpmrna31230hypothetical protein-2e-4Atcg00500-O.I.H.G.S.X.
0.1830.80.95PtpAffx.1980.3.A1_a_atCV246685hypothetical protein-3e-4At4g27380unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.992.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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