Co-expression analysis

Gene ID	Ptp.640.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g06050: OPR3 (OPDA-REDUCTASE 3) (HF=1e-21)
Module size	6 genes
NF	0.44
%ile	72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.94	Ptp.640.1.S1_s_at	CX186020	hypothetical protein	-	1e-21	At2g06050	OPR3 (OPDA-REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.95	PtpAffx.224310.1.S1_at	pmrna42743	hypothetical protein	-	1e-53	At1g63700	YDA (YODA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.96723.1.S1_at	CN518261	hypothetical protein	-	2e-27	At1g09010	glycoside hydrolase family 2 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	PtpAffx.123365.1.S1_s_at	BI139210	hypothetical protein	-	3e-36	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.145508.1.S1_at	CN549687	outward rectifying potassium channel	-	3e-4	At5g55630	ATKCO1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.212243.1.S1_at	pmrna24003	hypothetical protein	-	1e-26	At4g08580	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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