Co-expression analysis

Gene ID Ptp.6322.2.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At1g61810: BGLU45 (BETA-GLUCOSIDASE 45) (HF=4e-1)
Module size 15 genes
NF 0.45
%ile 74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.96Ptp.6322.2.A1_a_atCV241840--4e-1At1g61810BGLU45 (BETA-GLUCOSIDASE 45)O.I.H.G.S.X.
0.5683.90.97PtpAffx.1199.1.A1_atCK319205hypothetical protein-1e-20At5g38470DNA repair protein RAD23, putativeO.I.H.G.S.X.
0.5480.80.97Ptp.2402.1.S1_s_atCK092887hypothetical protein-3e-8At4g32560paramyosin-relatedO.I.H.G.S.X.
0.5380.50.97PtpAffx.5122.4.S1_s_atCV260788histone ubiquitination proteins group-3e-76At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.4875.40.97PtpAffx.922.1.S1_atCV244338hypothetical protein-3e-31At2g30050transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4875.40.97Ptp.4946.1.S1_atCV256806hypothetical protein-3e-73At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)O.I.H.G.S.X.
0.4774.60.96PtpAffx.10270.2.A1_a_atCV244557hypothetical protein-2e-52At3g58500PP2A-3 (PROTEIN PHOSPHATASE 2A-3)O.I.H.G.S.X.
0.4369.70.97Ptp.133.1.A1_s_atCV248900hypothetical protein-2e-46At1g32210ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)O.I.H.G.S.X.
0.4268.60.97PtpAffx.1447.3.S1_s_atCV233248hypothetical protein-2e+1At5g60290unknown proteinO.I.H.G.S.X.
0.3964.60.97PtpAffx.92886.1.S1_atCV237122hypothetical protein-2e-7At1g28120-O.I.H.G.S.X.
0.3964.60.97PtpAffx.17561.1.A1_s_atCF235338hypothetical protein-6e-50At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.3661.60.97Ptp.6476.3.S1_s_atCX170246hypothetical protein-1e-59At1g64230ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.3357.50.98PtpAffx.6505.1.A1_s_atCV238517hypothetical protein-2e-36At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2747.10.97PtpAffx.4784.1.A1_s_atCV268464hypothetical protein-8e+0At5g27290unknown proteinO.I.H.G.S.X.
0.2645.20.97Ptp.1365.1.S1_atCV279589hypothetical protein-4e-23At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.684.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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