Co-expression analysis

Gene ID	Ptp.6316.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g27830: - (HF=4e-5)
Module size	6 genes
NF	0.32
%ile	56.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.94	Ptp.6316.1.A1_at	CV282366	hypothetical protein	-	4e-5	At5g27830	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.249.280.S1_a_at	CK094419	hypothetical protein	-	5e-9	At1g55510	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	PtpAffx.63326.1.A1_at	CV244522	hypothetical protein	-	5e-16	At2g35100	ARAD1 (ARABINAN DEFICIENT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.27728.1.S1_at	BU895296	-	-	5e-35	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.94	PtpAffx.39331.1.S1_at	BU831384	hypothetical protein	-	4e-21	At5g46150	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	Ptp.2532.1.S1_x_at	CV277382	hypothetical protein	-	3e-52	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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