Co-expression analysis

Gene ID	Ptp.6308.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g15340: PPI2 (proton pump interactor 2) (HF=1e-10)
Module size	9 genes
NF	0.36
%ile	62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.94	Ptp.6308.1.S1_at	CV229172	hypothetical protein	-	1e-10	At3g15340	PPI2 (proton pump interactor 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.94	Ptp.148.1.S1_at	CV225595	hypothetical protein	-	4e-35	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	Ptp.5510.1.S1_at	CV243206	hypothetical protein	-	5e-41	At4g12650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.200667.1.S1_x_at	pmrna1297	hypothetical protein	-	4e-78	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	Ptp.8055.1.S1_at	CV231079	hypothetical protein	-	4e-12	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.252.1.A1_at	CV254804	Sec61 transport protein	-	4e-17	At1g78720	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	Ptp.2158.1.S1_at	CV227156	hypothetical protein	-	7e-3	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	Ptp.1369.1.A1_at	CV228220	hypothetical protein	-	2e-11	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.7136.1.A1_s_at	DN486671	hypothetical protein	-	4e-8	At3g16760	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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