Co-expression analysis

Gene ID Ptp.625.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=4e-60)
Module size 33 genes
NF 0.47
%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8997.80.94Ptp.625.1.S1_atCK087324hypothetical protein-4e-60At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.6287.20.97PtpAffx.45729.2.S1_atBU822004--8e-1At4g31800WRKY18O.I.H.G.S.X.
0.5784.20.96PtpAffx.39302.1.A1_atCK097884hypothetical protein-6e-1At4g14300heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeO.I.H.G.S.X.
0.5683.90.97PtpAffx.67495.1.S1_atDN496088hypothetical protein-2e+0At5g02020unknown proteinO.I.H.G.S.X.
0.5582.20.97PtpAffx.46447.1.S1_atCF228064histone deacetylase complex protein-2e-15At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.5480.80.95Ptp.5377.1.S1_atBU832261hypothetical protein-1e-25At2g43810small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putativeO.I.H.G.S.X.
0.5178.90.95Ptp.7076.1.S1_atCK092656hypothetical protein-7e-66At4g14360dehydration-responsive protein-relatedO.I.H.G.S.X.
0.5178.90.96PtpAffx.7780.1.S1_atBU885713hypothetical protein-8e-28At5g06060tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.5178.90.96Ptp.1279.1.S1_atCX660130hypothetical protein-3e-7At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.5178.90.97PtpAffx.13778.2.S1_atBU811409hypothetical protein-1e-9At1g17720ATB BETAO.I.H.G.S.X.
0.4975.70.97Ptp.2100.1.S1_atBU887063hypothetical protein-1e-6At1g36050unknown proteinO.I.H.G.S.X.
0.4875.40.96PtpAffx.1403.2.S1_atCX660430hypothetical protein-3e-9At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.4774.60.96Ptp.7767.1.S1_atDN492224hypothetical protein-4e-4At5g66540-O.I.H.G.S.X.
0.4774.60.96PtpAffx.8952.2.S1_atBU810871hypothetical protein-4e-57At3g43240ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.4774.60.96Ptp.3876.1.S1_atDN487776hypothetical protein-1e+0At5g03580polyadenylate-binding protein, putative / PABP, putativeO.I.H.G.S.X.
0.4673.70.97Ptp.4629.2.A1_atDN488224--1e+1At3g49440F-box family protein-relatedO.I.H.G.S.X.
0.4572.30.96Ptp.2272.1.A1_atCK087425--4e-7At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)O.I.H.G.S.X.
0.4471.90.96Ptp.2451.2.S1_atCF229175--9e-1At2g03770sulfotransferase family proteinO.I.H.G.S.X.
0.4471.90.97Ptp.5268.1.S1_atBU892880hypothetical protein-1e-36At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.4369.70.96Ptp.6609.1.S1_atBU884738histone H4-2e-37At5g59690histone H4O.I.H.G.S.X.
0.4369.70.96PtpAffx.3566.1.S1_atCV255072hypothetical protein-3e-77At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.4369.70.96PtpAffx.13765.1.S1_atCK092620hypothetical protein-6e-1At5g13090unknown proteinO.I.H.G.S.X.
0.4268.60.96Ptp.5567.2.A1_atCK087640--2e-1At3g44850protein kinase-relatedO.I.H.G.S.X.
0.4268.60.96Ptp.4297.1.S1_atDN499149hypothetical protein-2e+0At5g52990vesicle-associated membrane protein-relatedO.I.H.G.S.X.
0.4268.60.97Ptp.1253.1.S1_atCK109716hypothetical protein-5e-1At5g09960unknown proteinO.I.H.G.S.X.
0.4167.70.96PtpAffx.7414.1.S1_atCF234938hypothetical protein-6e+0At5g50030invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4067.00.97Ptp.3557.1.S1_atBU827074--8e-6At1g676807S RNA bindingO.I.H.G.S.X.
0.3964.60.96Ptp.2938.1.S1_atBU834752hypothetical protein-2e-30At1g44820aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.3863.70.96Ptp.1803.1.A1_atCK092809hypothetical protein-4e+0At2g25185-O.I.H.G.S.X.
0.3661.60.97Ptp.1749.1.A1_atCK093645--7e+0At5g44560VPS2.2O.I.H.G.S.X.
0.3661.60.96PtpAffx.5291.2.S1_atBU863309hypothetical protein-2e-29At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.3357.50.96Ptp.2678.1.S1_atCK091948hypothetical protein-5e-78At4g2482026S proteasome regulatory subunit, putative (RPN7)O.I.H.G.S.X.
0.2950.50.96Ptp.7136.1.A1_atDN486671hypothetical protein-4e-8At3g16760tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.583.5GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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