Co-expression analysis

Gene ID	Ptp.6239.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55020: LOX1 (HF=4e-8)
Module size	6 genes
NF	0.19
%ile	35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	Ptp.6239.1.S1_at	DN490661	hypothetical protein	-	4e-8	At1g55020	LOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.212132.1.S1_s_at	pmrna23792	hypothetical protein	-	3e-1	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	Ptp.3781.1.S1_at	DN498839	hypothetical protein	-	2e-10	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	Ptp.3333.2.A1_at	CX658805	-	-	2e-12	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	Ptp.6941.1.S1_at	CF233332	hypothetical protein	-	1e-5	At1g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.4070.3.S1_at	CX655364	hypothetical protein	-	3e-3	At3g54400	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.3303.1.A1_x_at, orthologous to the query gene, Ptp.6239.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	Zm.3303.1.A1_x_at	At1g55020	lipoxygenase	-	6e-6	At3g22400	LOX5	O.I.	H.G.	S.X.	Please select
0.66	82.3	Zm.14428.1.S1_at	At1g55020	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.12223.2.A1_at	At1g55020	hypothetical protein LOC100273854	-	9e-2	At3g60280	UCC3 (UCLACYANIN 3)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.14078.1.A1_at	At1g55020	hypothetical protein LOC100194235	-	3e-12	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5400.1.S1_at	At1g55020	-	-	6e-2	At5g20840	phosphoinositide phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.18347.1.A1_at	At1g55020	hypothetical protein LOC100192822	-	1e-11	At1g21480	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.6038.2.S1_at	At1g55020	GPI-anchored protein	-	2e+0	At4g28280	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.6712.1.A1_at	At1g55020	-	-	1e-54	At2g32670	ATVAMP725	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.3961.1.S1_at	At1g55020	hypothetical protein LOC100272531	-	3e-7	At1g70290	ATTPS8	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.11624.1.A1_at	At1g55020	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.24.2.S1_a_at	At1g55020	viviparous1	-	3e+0	At2g40765	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.18270.1.A1_at	At1g55020	Hypothetical protein LOC100194036	-	3e-6	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.534.1.A1_x_at	At1g55020	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.16520.1.S1_at	At1g55020	-	-	2e-13	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.7402.1.A1_at	At1g55020	IDP1704 protein /// hypothetical protein LOC100193772	-	2e+0	At1g12780	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.14078.2.S1_at	At1g55020	-	-	3e-10	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.10174.1.S1_at	At1g55020	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.264.2.A1_x_at	At1g55020	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.16811.2.A1_at	At1g55020	Hypothetical protein LOC100193878	-	4e-73	At2g42740	RPL16A	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.14125.1.A1_at	At1g55020	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.8062.1.A1_at	At1g55020	-	-	2e-5	At1g68920	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.17858.1.S1_at	At1g55020	hypothetical protein AY111541	-	2e+0	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.154.1.S1_at	At1g55020	actin-1	-	3e-108	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5503.1.A1_at	At1g55020	hypothetical protein LOC100192784	-	9e-3	At4g35920	MCA1 (mid1-complementing activity 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.6874.2.S1_a_at	At1g55020	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5439.1.S1_at	At1g55020	serine/threonine-protein kinase 12	-	5e-2	At5g38790	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.4429.1.S1_at	At1g55020	hypothetical protein LOC100216759	-	2e+1	At5g24355	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.6207.3.A1_at	At1g55020	60S ribosomal protein L15	-	3e-26	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.6655.2.A1_at	At1g55020	-	-	6e+0	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13249.2.A1_x_at	At1g55020	-	-	1e+0	At1g35255	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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