CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.6239.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g55020: LOX1 (HF=4e-8)

Module size 6 genes

NF 0.19

%ile 35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.89 Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.212132.1.S1_s_at pmrna23792 hypothetical protein - 3e-1 At1g69170 squamosa promoter-binding protein-like 6 (SPL6) O.I. H.G. S.X.
0.27 47.1 0.89 Ptp.3781.1.S1_at DN498839 hypothetical protein - 2e-10 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.22 38.3 0.87 Ptp.3333.2.A1_at CX658805 - - 2e-12 At1g63940 monodehydroascorbate reductase, putative O.I. H.G. S.X.
0.08 12.9 0.90 Ptp.6941.1.S1_at CF233332 hypothetical protein - 1e-5 At1g27290 unknown protein O.I. H.G. S.X.
0.07 11.6 0.89 PtpAffx.4070.3.S1_at CX655364 hypothetical protein - 3e-3 At3g54400 aspartyl protease family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1613941_at, orthologous to the query gene, Ptp.6239.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 1613941_at At1g55020 hypothetical protein LOC100251097 - 2e+0 At1g65390 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) O.I. H.G. S.X.
0.93 99.2 1614746_at At1g55020 hypothetical protein LOC100259225 - 6e-3 At2g17860 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.93 99.2 1611598_at At1g55020 hypothetical protein LOC100244034 - 7e+0 At5g38630 ACYB-1 O.I. H.G. S.X.
0.93 99.2 1611976_at At1g55020 hypothetical protein LOC100260879 - 4e-1 At2g20362 unknown protein O.I. H.G. S.X.
0.88 95.4 1622393_at At1g55020 proline rich protein 1 - 1e+0 At5g67460 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.88 95.4 1618487_at At1g55020 - - 1e+0 At3g01980 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.88 95.4 1616000_at At1g55020 hypothetical protein LOC100257299 - 2e-1 At4g35025 unknown protein O.I. H.G. S.X.
0.88 95.4 1614877_at At1g55020 hypothetical protein LOC100254752 - 4e-4 At1g63310 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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