Co-expression analysis

Gene ID	Ptp.6239.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55020: LOX1 (HF=4e-8)
Module size	6 genes
NF	0.19
%ile	35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	Ptp.6239.1.S1_at	DN490661	hypothetical protein	-	4e-8	At1g55020	LOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.212132.1.S1_s_at	pmrna23792	hypothetical protein	-	3e-1	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	Ptp.3781.1.S1_at	DN498839	hypothetical protein	-	2e-10	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	Ptp.3333.2.A1_at	CX658805	-	-	2e-12	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	Ptp.6941.1.S1_at	CF233332	hypothetical protein	-	1e-5	At1g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.4070.3.S1_at	CX655364	hypothetical protein	-	3e-3	At3g54400	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22828.2.S1_at, orthologous to the query gene, Ptp.6239.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.5	Ta.22828.2.S1_at	At1g55020	-	-	2e+0	At5g28070	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	93.8	Ta.4352.2.S1_a_at	At1g55020	CRC-related protein	-	9e-3	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.4352.1.S1_a_at	At1g55020	CRC-related protein	-	1e-7	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.78	91.1	Ta.9525.1.S1_x_at	At1g55020	-	-	7e-1	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.4489.1.S1_at	At1g55020	-	-	4e+0	At5g67620	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	TaAffx.19975.1.S1_at	At1g55020	-	-	9e+0	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.5056.1.A1_a_at	At1g55020	-	-	8e-2	At3g54260	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	TaAffx.38265.1.S1_at	At1g55020	-	-	3e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.4771.1.S1_at	At1g55020	-	-	2e-2	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.5048.1.S1_at	At1g55020	-	-	2e-2	At2g39320	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	TaAffx.119419.1.A1_at	At1g55020	-	-	7e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.69	86.9	TaAffx.38265.1.S1_x_at	At1g55020	-	-	3e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.28690.2.S1_at	At1g55020	-	-	4e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.21001.1.S1_at	At1g55020	-	-	1e+1	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.4569.1.S1_at	At1g55020	-	-	5e+0	At5g38435	SPH8 (S-PROTEIN HOMOLOGUE 8)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.28690.2.S1_x_at	At1g55020	-	-	4e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.3305.2.S1_a_at	At1g55020	-	-	1e-37	At5g62670	AHA11 (Arabidopsis H(+)-ATPase 11)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.4606.1.A1_at	At1g55020	-	-	2e+0	At3g12890	ASML2 (ACTIVATOR OF SPOMIN::LUC2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.19975.2.A1_at	At1g55020	-	-	3e-1	At5g51400	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.6869.1.S1_at	At1g55020	ADP-glucose pyrophosphorylase small subunit	-	6e-33	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.105860.1.S1_at	At1g55020	-	-	3e-1	At4g08740	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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