Co-expression analysis

Gene ID Ptp.6239.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g55020: LOX1 (HF=4e-8)
Module size 6 genes
NF 0.19
%ile 35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.89Ptp.6239.1.S1_atDN490661hypothetical protein-4e-8At1g55020LOX1O.I.H.G.S.X.
0.3661.60.90PtpAffx.212132.1.S1_s_atpmrna23792hypothetical protein-3e-1At1g69170squamosa promoter-binding protein-like 6 (SPL6)O.I.H.G.S.X.
0.2747.10.89Ptp.3781.1.S1_atDN498839hypothetical protein-2e-10At3g49940LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)O.I.H.G.S.X.
0.2238.30.87Ptp.3333.2.A1_atCX658805--2e-12At1g63940monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.0812.90.90Ptp.6941.1.S1_atCF233332hypothetical protein-1e-5At1g27290unknown proteinO.I.H.G.S.X.
0.0711.60.89PtpAffx.4070.3.S1_atCX655364hypothetical protein-3e-3At3g54400aspartyl protease family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.299.1GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
6.597.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEf0009L21r2_s_at, orthologous to the query gene, Ptp.6239.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6380.3HVSMEf0009L21r2_s_atAt1g55020--3e-1At5g57550XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)O.I.H.G.S.X.
0.6784.7Contig5427_atAt1g55020--7e-14At2g20900diacylglycerol kinase, putativeO.I.H.G.S.X.
0.6077.3HT11A16u_s_atAt1g55020--2e+0At1g64080unknown proteinO.I.H.G.S.X.
0.5674.3Contig16666_atAt1g55020--3e+0At4g36460unknown proteinO.I.H.G.S.X.
0.4458.9Contig18942_atAt1g55020--5e-1At2g18530protein kinase family proteinO.I.H.G.S.X.
0.3037.0Contig18069_atAt1g55020--2e+0At2g20635ATP binding / protein kinase/ protein serine/threonine kinaseO.I.H.G.S.X.
0.2935.5Contig25411_atAt1g55020--2e+0At2g29540ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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