Co-expression analysis

Gene ID	Ptp.6239.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55020: LOX1 (HF=4e-8)
Module size	6 genes
NF	0.19
%ile	35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.89	Ptp.6239.1.S1_at	DN490661	hypothetical protein	-	4e-8	At1g55020	LOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.212132.1.S1_s_at	pmrna23792	hypothetical protein	-	3e-1	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	Ptp.3781.1.S1_at	DN498839	hypothetical protein	-	2e-10	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.87	Ptp.3333.2.A1_at	CX658805	-	-	2e-12	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	Ptp.6941.1.S1_at	CF233332	hypothetical protein	-	1e-5	At1g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.4070.3.S1_at	CX655364	hypothetical protein	-	3e-3	At3g54400	aspartyl protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.20925.1.S1_at, orthologous to the query gene, Ptp.6239.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.20925.1.S1_at	At1g55020	-	-	3e-2	At3g22400	LOX5	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.91465.1.S1_s_at	At1g55020	-	-	2e-1	At2g22570	NIC1 (NICOTINAMIDASE 1)	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.6668.1.S1_at	At1g55020	-	-	1e+0	At2g18210	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.61286.1.S1_at	At1g55020	-	-	3e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.2146.1.S1_at	At1g55020	-	-	1e-39	At1g50430	DWF5 (DWARF 5)	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.3301.1.S1_at	At1g55020	-	-	1e+0	At3g01950	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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