CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.6239.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g55020: LOX1 (HF=4e-8)

Module size 6 genes

NF 0.19

%ile 35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.89 Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.212132.1.S1_s_at pmrna23792 hypothetical protein - 3e-1 At1g69170 squamosa promoter-binding protein-like 6 (SPL6) O.I. H.G. S.X.
0.27 47.1 0.89 Ptp.3781.1.S1_at DN498839 hypothetical protein - 2e-10 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.22 38.3 0.87 Ptp.3333.2.A1_at CX658805 - - 2e-12 At1g63940 monodehydroascorbate reductase, putative O.I. H.G. S.X.
0.08 12.9 0.90 Ptp.6941.1.S1_at CF233332 hypothetical protein - 1e-5 At1g27290 unknown protein O.I. H.G. S.X.
0.07 11.6 0.89 PtpAffx.4070.3.S1_at CX655364 hypothetical protein - 3e-3 At3g54400 aspartyl protease family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 99.1 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.5 97.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g55020, orthologous to the query gene, Ptp.6239.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.51 66.3 At1g55020 841944 LOX1 lipoxygenase, a defense gene conferring resistance Xanthomonas campestris O.I. H.G. S.X.
0.52 67.4 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. O.I. H.G. S.X.
0.52 67.4 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. O.I. H.G. S.X.
0.50 65.3 At3g16460 820894 jacalin lectin family protein F:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVA O.I. H.G. S.X.
0.48 62.5 At3g20370 821582 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF O.I. H.G. S.X.
0.48 62.5 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. O.I. H.G. S.X.
0.46 59.8 At1g14120 837971 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. H.G. S.X.
0.44 57.2 At5g26280 832697 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM O.I. H.G. S.X.
0.42 53.9 At2g22770 816807 NAI1 regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica. O.I. H.G. S.X.
0.39 48.4 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. O.I. H.G. S.X.
0.29 30.3 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. H.G. S.X.
0.24 20.7 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. H.G. S.X.
0.24 20.7 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. H.G. S.X.
0.20 14.4 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. H.G. S.X.
0.18 11.4 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. O.I. H.G. S.X.
0.18 11.4 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. O.I. H.G. S.X.
0.17 10.2 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e O.I. H.G. S.X.
0.16 8.8 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA O.I. H.G. S.X.
0.14 6.8 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage