Co-expression analysis

Gene ID	Ptp.6191.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g10300: calcium-binding EF hand family protein (HF=1e-30)
Module size	10 genes
NF	0.63
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.89	Ptp.6191.1.S1_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.92	PtpAffx.73006.1.S1_s_at	CV255422	hypothetical protein	-	1e-25	At1g56070	LOS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.92	PtpAffx.217218.1.S1_at	pmrna32394	hypothetical protein	-	9e-10	At1g58110	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.2753.1.S1_at	CV248422	hypothetical protein	-	4e-32	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.92	PtpAffx.211553.1.S1_x_at	pmrna22641	hypothetical protein	-	1e-5	At2g46040	ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.92	Ptp.2885.2.A1_at	CV241140	hypothetical protein	-	4e+0	At5g46770	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.92	PtpAffx.7308.3.S1_at	CK091366	hypothetical protein	-	6e-37	At4g39520	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.17025.3.A1_at	CV268384	hypothetical protein	-	3e+0	At4g39330	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.91	PtpAffx.209777.1.S1_at	pmrna19286	hypothetical protein	-	2e-20	At1g17210	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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