CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.6163.2.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g53710: AGD6 (HF=9e-24)

Module size 6 genes

NF 0.49

%ile 78.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.96 Ptp.6163.2.S1_s_at CF234204 hypothetical protein - 9e-24 At3g53710 AGD6 O.I. H.G. S.X.
0.47 74.6 0.96 PtpAffx.2152.2.S1_a_at CA826185 hypothetical protein - 2e-5 At3g13410 unknown protein O.I. H.G. S.X.
0.44 71.9 0.96 PtpAffx.138176.1.S1_s_at BU883966 hypothetical protein - 7e-5 At2g17720 oxidoreductase, 2OG-Fe(II) oxygenase family protein O.I. H.G. S.X.
0.44 71.9 0.97 Ptp.5670.1.S1_s_at CN523903 hypothetical protein - 6e-16 At3g50000 CKA2 (CASEIN KINASE II, ALPHA CHAIN 2) O.I. H.G. S.X.
0.44 71.9 0.97 Ptp.1287.2.S1_s_at CX178052 hypothetical protein - 2e-73 At5g45130 RHA1 (RAB HOMOLOG 1) O.I. H.G. S.X.
0.40 67.0 0.97 PtpAffx.135416.1.S1_s_at CN517682 hypothetical protein - 6e-2 At5g50650 WD-40 repeat family protein / St12p protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	78.6	0.96	Ptp.6163.2.S1_s_at	CF234204	hypothetical protein	-	9e-24	At3g53710	AGD6	O.I.	H.G.	S.X.
0.47	74.6	0.96	PtpAffx.2152.2.S1_a_at	CA826185	hypothetical protein	-	2e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.96	PtpAffx.138176.1.S1_s_at	BU883966	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.44	71.9	0.97	Ptp.5670.1.S1_s_at	CN523903	hypothetical protein	-	6e-16	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.
0.44	71.9	0.97	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.
0.40	67.0	0.97	PtpAffx.135416.1.S1_s_at	CN517682	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.94	PtpAffx.52359.1.S1_at	CX185279	hypothetical protein	-	5e-3	At5g04420	kelch repeat-containing protein	O.I.	H.G.	S.X.
0.55	82.2	0.95	PtpAffx.150556.1.S1_at	CK107641	hypothetical protein	-	3e-16	At5g35410	SOS2 (SALT OVERLY SENSITIVE 2)	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.143706.1.S1_at	BU874495	hypothetical protein	-	1e+0	At2g21010	C2 domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.12253.2.S1_at	CK099792	-	-	3e-2	At4g35510	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.97	PtpAffx.4529.1.S1_at	CK091600	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.
0.46	73.7	0.95	PtpAffx.111781.1.S1_at	BI130215	hypothetical protein	-	6e-3	At1g78280	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.200567.1.S1_at	pmrna1120	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.
0.43	69.7	0.95	PtpAffx.20059.2.S1_s_at	CA925998	hypothetical protein	-	2e-70	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.
0.43	69.7	0.95	PtpAffx.133062.1.S1_at	CX176895	hypothetical protein	-	5e-1	At3g09035	legume lectin family protein	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.12848.1.S1_at	DN484571	hypothetical protein	-	3e-11	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.
0.40	67.0	0.96	Ptp.3285.1.S1_at	CX185078	hypothetical protein	-	9e-18	At3g57030	strictosidine synthase family protein	O.I.	H.G.	S.X.
0.38	63.7	0.96	PtpAffx.14809.2.S1_at	BU824022	tubulin, beta chain	-	1e-56	At1g20010	TUB5	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.4465.2.S1_at	CA929665	hypothetical protein	-	3e-126	At1g20260	hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.450.6.S1_a_at	CN519032	hypothetical protein	-	6e-58	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.
0.36	61.6	0.97	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	O.I.	H.G.	S.X.
0.35	59.7	0.96	Ptp.6945.1.S1_at	CV282639	hypothetical protein	-	6e-38	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.221161.1.S1_at	pmrna37813	hypothetical protein	-	1e-54	At4g23000	hydrolase/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.137956.1.S1_at	CK103575	hypothetical protein	-	1e-12	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.206674.1.S1_s_at	pmrna13243	hypothetical protein	-	2e-138	At2g26140	ftsh4 (FtsH protease 4)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.151309.1.S1_s_at	DN501290	hypothetical protein	-	7e-12	At3g16090	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.212562.1.S1_at	pmrna24616	hypothetical protein	-	5e-12	At5g53500	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.8857.3.S1_at	BP928835	hypothetical protein	-	3e-1	At5g40660	ATP12 protein-related	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.137984.1.S1_s_at	CK102321	hypothetical protein	-	7e-15	At1g71410	protein kinase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.74657.1.S1_s_at	CN520971	hypothetical protein	-	3e-45	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.
0.28	50.5	0.93	Ptp.5608.1.S1_s_at	CF229069	hypothetical protein	-	2e-6	At1g06200	serine-type peptidase	O.I.	H.G.	S.X.
0.27	47.1	0.92	PtpAffx.124217.1.S1_s_at	CX179283	f-box family protein	-	3e-10	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.149393.1.S1_at	CN524402	hypothetical protein	-	5e-22	At4g29960	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.96	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	O.I.	H.G.	S.X.
0.26	45.2	0.93	Ptp.1090.1.S1_at	BU832866	hypothetical protein	-	2e-6	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.124389.1.S1_at	BU809679	hypothetical protein	-	7e-68	At1g43710	emb1075 (embryo defective 1075)	O.I.	H.G.	S.X.
0.25	43.6	0.92	PtpAffx.210657.1.S1_at	pmrna20902	f-box family protein	-	3e+0	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.10720.2.S1_at	AJ773949	hypothetical protein	-	3e-1	At2g39650	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.72180.1.S1_s_at	AI162185	hypothetical protein	-	4e-13	At3g51040	RTH (RTE1-HOMOLOG)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 92.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.9	92.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.6163.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g53710: AGD6 (HF=9e-24)
Module size	6 genes
NF	0.49
%ile	78.9

Co-expression analysis

Gene ID Ptp.6163.2.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g53710: AGD6 (HF=9e-24) Module size 6 genes NF 0.49 %ile 78.9

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.6163.2.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g53710: AGD6 (HF=9e-24)

Module size 6 genes

NF 0.49

%ile 78.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays