Co-expression analysis

Gene ID	Ptp.6151.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g23040: CDF1 (CELL GROWTH DEFECT FACTOR 1) (HF=2e-6)
Module size	6 genes
NF	0.54
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.96	Ptp.6151.1.A1_at	DN487970	hypothetical protein	-	2e-6	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.45383.2.A1_a_at	CV255277	hypothetical protein	-	1e-9	At4g22000	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.1997.1.A1_x_at	CV236998	hypothetical protein	-	4e-34	At5g48870	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.32368.1.S1_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.152488.1.S1_s_at	CN520535	hypothetical protein	-	3e-11	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.46613.1.S1_s_at	CV233642	hypothetical protein	-	7e-12	At4g27390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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